PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG447600.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 161aa    MW: 18140.9 Da    PI: 10.0129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG447600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-092411254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         RRdr+N++f eL +++ +    ++ Kl+Ka iL  A++ + +L
  Pavir.1KG447600.2.p  2 RRDRLNDRFLELSSVMNPG---KQAKLNKANILNDATRMLAQL 41
                         ******************9...9***************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.696141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-5246No hitNo description
SuperFamilySSF474592.36E-10262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRRDRLNDRF LELSSVMNPG KQAKLNKANI LNDATRMLAQ LRGEAEKLKE SNEKLRENIK  60
DLKEEKNELR EEKVRLKAEK ERLEQQVKAM SAAPTGYVPH LPHPAAYHPA AFAPFAPPQQ  120
DPTNKGAPIP AAFPGMAMWQ WLPPTMVDTT QDPKLWPPNA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139980.0leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409201e-164BT040920.1 Zea mays full-length cDNA clone ZM_BFc0152D09 mRNA, complete cds.
GenBankEU9655851e-164EU965585.1 Zea mays clone 287196 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150072.11e-103DNA binding protein
RefseqXP_008643673.11e-103PREDICTED: DNA binding protein isoform X1
RefseqXP_008676877.11e-103PREDICTED: uncharacterized protein LOC100274393 isoform X1
SwissprotQ9FH376e-50ILR3_ARATH; Transcription factor ILR3
TrEMBLB6SST81e-103B6SST8_MAIZE; DNA binding protein
STRINGSb04g001200.11e-104(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-35bHLH family protein